Colin,
As part of the waterworks work I have done I have been using the protocol adopted and approved by the water works (The client). I offer to allow them to do the decontamination of the system, that seems to make them happy and gives them a chance to look over the equipment.
Remember the gloves and safety glasses (Full face shield recommended) when working with any chemicals. An apron is also nice to protect you and your cloths. Like the latex gloves you can get the food service plastic aprons by the box at a reasonable price.
I clean the ROV and tether before leaving the office using chlorine (NSF60) @ 5 to 1 as Chief and ROVSteve have recommended and put both the ROV and tether into a double plastic bags for transport to the site. At one job they didn't have a hard protocol but ended up using a bit heaver concentration (4 to 1) for 5 minutes in a 5 gallon bucket followed by spraying the tether (still in the double plastic bag).
As part of your report I would also document the procedure and materials used for decontamination just in case there is any questions or issues later.
Hope this helps and I know there are many methods and suggestions out there, Talk with your customers and if you can get a copy of their decontamination procedure before the job it will be helpful in planning for doing it. One client wanted the chlorine soak plus 5 min under UV light! The float block looks way cool under black light!
Good luck and clean waters!
Patrick
NSF60 Ref:
http://www.nsf.org/business/water_distribution/pdf/NSF_Fact_Sheet.pdfA good thing to have on hand for reference.